diff --git a/.DS_Store b/.DS_Store index 1f2a61b..a67ee6d 100644 Binary files a/.DS_Store and b/.DS_Store differ diff --git a/TestFileRoxygen.R b/TestFileRoxygen.R index fd73aec..313a326 100644 --- a/TestFileRoxygen.R +++ b/TestFileRoxygen.R @@ -204,8 +204,8 @@ divFUN(x,Div,N,res,noDil) # [1] 0.3333333333 0.1111111111 0.0370370370 0.0123456790 0.0041152263 0.0013717421 0.0004572474 -circle <- read.csv("~/plateflow/circle.csv") -all_l2 <- read.csv("~/plateflow/all_l2.csv") +circle <- read.csv("./tests/circle.csv") +all_l2 <- read.csv("./tests/all_l2.csv") sigmoid <- c(10.0, 10.0, 110.0, 110.0, 1.0, 1.0, -3.5, 0.0) indS <- 3 indT <- 3 diff --git a/app.R b/app.R index 282e6c5..94f96d4 100644 --- a/app.R +++ b/app.R @@ -137,7 +137,7 @@ server <- function(input, output, session) { #actionLink("selectall","SelectAll"), h5("\n\n\n Author: Franz Innerbichler, InnerAnalytics")), - column(6, + column(4, h4("Suitability tests for 4-parametric logistic regression"), checkboxGroupInput("selectedSSTs", "Which suitability tests to be used?", choices= c("F-test on Regr."="1", "EQ-test on lower asymptote difference"= "2", @@ -155,6 +155,10 @@ server <- function(input, output, session) { selected= c("1","2","3","4","5","6","7","8")) ), column(4, + h4("Example of EXCEL file "), + h4("with column of dilutions and at least 2 columns of reference and the same amount of columns with test sample readouts."), + tags$img(src="ExampleXL.png", class="adv_logo", width="100%"), + plotOutput("plotSing", width="400px", height="300px")) ), diff --git a/tests/all_l2.csv b/tests/all_l2.csv new file mode 100644 index 0000000..31c935f --- /dev/null +++ b/tests/all_l2.csv @@ -0,0 +1,49 @@ +"","log_dose","replname","readout","isRef","isSample" +"1",-1.20397280432594,"R_dil1",98.1494842397355,1,0 +"2",-1.89711998488588,"R_dil1",93.1587231445345,1,0 +"3",-2.59026716544583,"R_dil1",80.3990552915314,1,0 +"4",-3.28341434600577,"R_dil1",61.033310227763,1,0 +"5",-3.97656152656572,"R_dil1",49.6514876034121,1,0 +"6",-4.669175515964,"R_dil1",32.0572319366494,1,0 +"7",-5.36232269652395,"R_dil1",21.1596181190714,1,0 +"8",-6.05333995082607,"R_dil1",15.5847305451664,1,0 +"9",-1.20397280432594,"R_dil2",101.132351766499,1,0 +"10",-1.89711998488588,"R_dil2",91.2235853012395,1,0 +"11",-2.59026716544583,"R_dil2",81.7476695354555,1,0 +"12",-3.28341434600577,"R_dil2",69.3997533685165,1,0 +"13",-3.97656152656572,"R_dil2",50.6311734518003,1,0 +"14",-4.669175515964,"R_dil2",31.1550411274784,1,0 +"15",-5.36232269652395,"R_dil2",27.3660034807448,1,0 +"16",-6.05333995082607,"R_dil2",14.0792874148632,1,0 +"17",-1.20397280432594,"R_dil3",105.462156547676,1,0 +"18",-1.89711998488588,"R_dil3",91.4808765950732,1,0 +"19",-2.59026716544583,"R_dil3",82.9619247116025,1,0 +"20",-3.28341434600577,"R_dil3",65.1152980929551,1,0 +"21",-3.97656152656572,"R_dil3",48.2011497920146,1,0 +"22",-4.669175515964,"R_dil3",36.4442269766279,1,0 +"23",-5.36232269652395,"R_dil3",20.8814652853181,1,0 +"24",-6.05333995082607,"R_dil3",14.6830036985303,1,0 +"25",-1.20397280432594,"T_dil1",96.0548967939464,0,1 +"26",-1.89711998488588,"T_dil1",92.64362455265,0,1 +"27",-2.59026716544583,"T_dil1",81.663576232501,0,1 +"28",-3.28341434600577,"T_dil1",62.7648499188736,0,1 +"29",-3.97656152656572,"T_dil1",43.5953468051591,0,1 +"30",-4.669175515964,"T_dil1",40.4168539380897,0,1 +"31",-5.36232269652395,"T_dil1",20.4592651764409,0,1 +"32",-6.05333995082607,"T_dil1",13.7318092439224,0,1 +"33",-1.20397280432594,"T_dil2",98.6278362064847,0,1 +"34",-1.89711998488588,"T_dil2",91.9467456348685,0,1 +"35",-2.59026716544583,"T_dil2",81.1063382356277,0,1 +"36",-3.28341434600577,"T_dil2",66.5646933286069,0,1 +"37",-3.97656152656572,"T_dil2",47.7664156143296,0,1 +"38",-4.669175515964,"T_dil2",36.2782062395084,0,1 +"39",-5.36232269652395,"T_dil2",25.3315901588244,0,1 +"40",-6.05333995082607,"T_dil2",20.5194055962288,0,1 +"41",-1.20397280432594,"T_dil3",102.563637887905,0,1 +"42",-1.89711998488588,"T_dil3",95.1125027406773,0,1 +"43",-2.59026716544583,"T_dil3",79.9919822121742,0,1 +"44",-3.28341434600577,"T_dil3",63.9480856159592,0,1 +"45",-3.97656152656572,"T_dil3",51.6518632196035,0,1 +"46",-4.669175515964,"T_dil3",32.0732639758047,0,1 +"47",-5.36232269652395,"T_dil3",25.9208514144765,0,1 +"48",-6.05333995082607,"T_dil3",13.8747467364743,0,1 diff --git a/tests/circle.csv b/tests/circle.csv new file mode 100644 index 0000000..20fe42f --- /dev/null +++ b/tests/circle.csv @@ -0,0 +1,19 @@ +"","log_dose","replname","readout","isRef","isSample" +"3",-2.59026716544583,"R_dil1",80.3990552915314,1,0 +"11",-2.59026716544583,"R_dil2",81.7476695354555,1,0 +"19",-2.59026716544583,"R_dil3",82.9619247116025,1,0 +"4",-3.28341434600577,"R_dil1",61.033310227763,1,0 +"12",-3.28341434600577,"R_dil2",69.3997533685165,1,0 +"20",-3.28341434600577,"R_dil3",65.1152980929551,1,0 +"5",-3.97656152656572,"R_dil1",49.6514876034121,1,0 +"13",-3.97656152656572,"R_dil2",50.6311734518003,1,0 +"21",-3.97656152656572,"R_dil3",48.2011497920146,1,0 +"27",-2.59026716544583,"T_dil1",81.663576232501,0,1 +"35",-2.59026716544583,"T_dil2",81.1063382356277,0,1 +"43",-2.59026716544583,"T_dil3",79.9919822121742,0,1 +"28",-3.28341434600577,"T_dil1",62.7648499188736,0,1 +"36",-3.28341434600577,"T_dil2",66.5646933286069,0,1 +"44",-3.28341434600577,"T_dil3",63.9480856159592,0,1 +"29",-3.97656152656572,"T_dil1",43.5953468051591,0,1 +"37",-3.97656152656572,"T_dil2",47.7664156143296,0,1 +"45",-3.97656152656572,"T_dil3",51.6518632196035,0,1 diff --git a/www/ExampleXL.pdf b/www/ExampleXL.pdf new file mode 100644 index 0000000..6abeaf3 Binary files /dev/null and b/www/ExampleXL.pdf differ diff --git a/www/ExampleXL.png b/www/ExampleXL.png new file mode 100644 index 0000000..6286b05 Binary files /dev/null and b/www/ExampleXL.png differ